Below are links where you can download the entire DNAproDB database for your own use. The file you'll recieve is a compressed text file. Once extracted, each line will contain a single JSON document corresponding to a single DNA-protein complex which is stored in the database. You'll have to read the file line-by-line and parse each line individually, rather than parsing the entire file at once. Only the data which is extracted from the structure is stored - the actual coordinates of the structures are not provided. The uncompressed file will be several GB in size.
To extract the file, use the program p7zip. A useful tutorial is available here. Once installed, the command to extract is simply:
7z e <FILE_NAME>
If you use data provided by DNAproDB in your work, please remember to cite us!
Right-click, choose "save link as..." and choose a filename and destination.
2.0 (initial release): https://dnaprodb.usc.edu/data/dnaprodb_2.0.7z
1.0 (initial release): https://dnaprodb.usc.edu/data/dnaprodb_1.0.7z