DNAproDB is a database, structure processing pipeline, and visualization tool to analyze DNA-protein complexes.
Search thousands of DNA-protein complex structures based on features of the DNA, protein or DNA-protein interactions.
Visualize data using customizable, interactive visualizations. These can be exported for use in publications, or used as a data exploration tool.
Upload your own structures obtained from experiment or simulation and process them with our pipeline to generate the same data and visualizations which are available for any structure in our database.
Search thousands of DNA-protein complex structures based on features of the DNA, protein or DNA-protein interactions.
Visualize data using customizable, interactive visualizations. These can be exported for use in publications, or used as a data exploration tool.
Upload your own structures obtained from experiment or simulation and process them with our pipeline to generate the same data and visualizations which are available for any structure in our database.
This is the new DNAproDB. We are in the process of publication. The previous version is available at https://dnaprodb.usc.edu/v1
If you use DNAproDB in your work, please cite us: Jared M. Sagendorf, Helen M. Berman, Remo Rohs; Nucleic Acids Res 2017, 45, W89-W97. doi: 10.1093/nar/gkx272 and Jared M. Sagendorf, Nicholas Markarian, Helen M. Berman, Remo Rohs; Nucleic Acids Res 2019, 48, D277-D287. doi: 10.1093/nar/gkz889
DNAproDB is automatically updated weekly.